J5_7ZHG_001

3D structure

PDB id

7ZHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of Pyrococcus abyssi 30S ribosomal subunit bound to mRNA and initiator tRNA anticodon stem-loop

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

CUAU*AGUG*CUUUUC*GGAAUAAG*(4AC)GAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZHG|1|2|C|42
7ZHG|1|2|U|43
7ZHG|1|2|A|44
7ZHG|1|2|U|45
*
7ZHG|1|2|A|412
7ZHG|1|2|G|413
7ZHG|1|2|U|414
7ZHG|1|2|G|415
*
7ZHG|1|2|C|433
7ZHG|1|2|U|434
7ZHG|1|2|U|435
7ZHG|1|2|U|436
7ZHG|1|2|U|437
7ZHG|1|2|C|438
*
7ZHG|1|2|G|458
7ZHG|1|2|G|459
7ZHG|1|2|A|460
7ZHG|1|2|A|461
7ZHG|1|2|U|462
7ZHG|1|2|A|463
7ZHG|1|2|A|464
7ZHG|1|2|G|465
*
7ZHG|1|2|4AC|511
7ZHG|1|2|G|512
7ZHG|1|2|A|513
7ZHG|1|2|G|514

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain D

30S ribosomal protein S4

Chain N

30S ribosomal protein S12

Chain V

30S ribosomal protein S24e