J5_7ZJX_009

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

7ZJX|1|S2|G|126, 7ZJX|1|S2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZJX|1|S2|G|123
7ZJX|1|S2|U|124
7ZJX|1|S2|C|125
7ZJX|1|S2|G|126
7ZJX|1|S2|C|127
7ZJX|1|S2|U|128
7ZJX|1|S2|C|129
*
7ZJX|1|S2|G|183
7ZJX|1|S2|G|184
7ZJX|1|S2|G|185
*
7ZJX|1|S2|U|214
7ZJX|1|S2|G|215
*
7ZJX|1|S2|C|311
7ZJX|1|S2|C|312
7ZJX|1|S2|G|313
*
7ZJX|1|S2|C|338
7ZJX|1|S2|G|339
7ZJX|1|S2|A|340
7ZJX|1|S2|C|341
7ZJX|1|S2|C|342

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SP

40S ribosomal protein S4

Chain SR

40S ribosomal protein S6

Chain ST

40S ribosomal protein S8