J5_7ZOD_001

3D structure

PDB id

7ZOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

7ZOD|1|b|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_7ZOD_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0465

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7ZOD|1|b|C|47
7ZOD|1|b|G|48
7ZOD|1|b|A|49
7ZOD|1|b|U|50
7ZOD|1|b|G|51
7ZOD|1|b|A|52
7ZOD|1|b|A|53
7ZOD|1|b|G|54
*
7ZOD|1|b|C|116
7ZOD|1|b|G|117
7ZOD|1|b|A|118
7ZOD|1|b|A|119
7ZOD|1|b|U|120
7ZOD|1|b|G|121
*
7ZOD|1|b|C|130
7ZOD|1|b|A|131
*
7ZOD|1|b|U|148
7ZOD|1|b|A|149
7ZOD|1|b|U|150
*
7ZOD|1|b|A|176
7ZOD|1|b|G|177
7ZOD|1|b|G|178

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34