J5_7ZOD_005

3D structure

PDB id

7ZOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUCC

Length

37 nucleotides

Bulged bases

7ZOD|1|b|A|2062, 7ZOD|1|b|A|2448, 7ZOD|1|b|U|2585, 7ZOD|1|b|U|2609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZOD|1|b|G|2057
7ZOD|1|b|A|2058
7ZOD|1|b|A|2059
7ZOD|1|b|A|2060
7ZOD|1|b|G|2061
7ZOD|1|b|A|2062
7ZOD|1|b|C|2063
7ZOD|1|b|C|2064
*
7ZOD|1|b|G|2446
7ZOD|1|b|G|2447
7ZOD|1|b|A|2448
7ZOD|1|b|U|2449
7ZOD|1|b|A|2450
7ZOD|1|b|A|2451
7ZOD|1|b|C|2452
7ZOD|1|b|A|2453
*
7ZOD|1|b|U|2500
7ZOD|1|b|C|2501
7ZOD|1|b|G|2502
7ZOD|1|b|A|2503
7ZOD|1|b|U|2504
7ZOD|1|b|G|2505
7ZOD|1|b|U|2506
7ZOD|1|b|C|2507
*
7ZOD|1|b|G|2582
7ZOD|1|b|G|2583
7ZOD|1|b|U|2584
7ZOD|1|b|U|2585
7ZOD|1|b|U|2586
7ZOD|1|b|A|2587
7ZOD|1|b|G|2588
*
7ZOD|1|b|C|2606
7ZOD|1|b|G|2607
7ZOD|1|b|G|2608
7ZOD|1|b|U|2609
7ZOD|1|b|C|2610
7ZOD|1|b|C|2611

Current chains

Chain b

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L32

Chain c

50S ribosomal protein L2

Chain d

50S ribosomal protein L3

Chain e

50S ribosomal protein L4

Chain l

50S ribosomal protein L15

Chain m

50S ribosomal protein L16

Chain s

50S ribosomal protein L22