J5_7ZRS_005

3D structure

PDB id

7ZRS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

ACUUUG*UUUCCUUC*GGACUUU*AUAGAAUAGGA*UAAUGAU

Length

39 nucleotides

Bulged bases

7ZRS|1|2|U|639, 7ZRS|1|2|U|694, 7ZRS|1|2|C|696, 7ZRS|1|2|C|697, 7ZRS|1|2|U|813, 7ZRS|1|2|G|815, 7ZRS|1|2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZRS|1|2|A|636
7ZRS|1|2|C|637
7ZRS|1|2|U|638
7ZRS|1|2|U|639
7ZRS|1|2|U|640
7ZRS|1|2|G|641
*
7ZRS|1|2|U|693
7ZRS|1|2|U|694
7ZRS|1|2|U|695
7ZRS|1|2|C|696
7ZRS|1|2|C|697
7ZRS|1|2|U|698
7ZRS|1|2|U|699
7ZRS|1|2|C|700
*
7ZRS|1|2|G|738
7ZRS|1|2|G|739
7ZRS|1|2|A|740
7ZRS|1|2|C|741
7ZRS|1|2|U|742
7ZRS|1|2|U|743
7ZRS|1|2|U|744
*
7ZRS|1|2|A|807
7ZRS|1|2|U|808
7ZRS|1|2|A|809
7ZRS|1|2|G|810
7ZRS|1|2|A|811
7ZRS|1|2|A|812
7ZRS|1|2|U|813
7ZRS|1|2|A|814
7ZRS|1|2|G|815
7ZRS|1|2|G|816
7ZRS|1|2|A|817
*
7ZRS|1|2|U|854
7ZRS|1|2|A|855
7ZRS|1|2|A|856
7ZRS|1|2|U|857
7ZRS|1|2|G|858
7ZRS|1|2|A|859
7ZRS|1|2|U|860

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AE

40S ribosomal protein S4-A

Chain AH

40S ribosomal protein S7-A

Chain AL

40S ribosomal protein S11-A

Chain AN

40S ribosomal protein S13

Chain AW

RPS22A isoform 1

Chain BQ

60S ribosomal protein L19-A