J5_7ZS5_004
3D structure
- PDB id
- 7ZS5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 7ZS5|1|1|G|2116, 7ZS5|1|1|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7ZS5_004 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.1179
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7ZS5|1|1|G|1906
7ZS5|1|1|C|1907
7ZS5|1|1|A|1908
7ZS5|1|1|A|1909
7ZS5|1|1|A|1910
7ZS5|1|1|A|1911
7ZS5|1|1|U|1912
7ZS5|1|1|A|1913
7ZS5|1|1|G|1914
*
7ZS5|1|1|U|1938
7ZS5|1|1|G|1939
*
7ZS5|1|1|U|2109
7ZS5|1|1|G|2110
*
7ZS5|1|1|C|2114
7ZS5|1|1|G|2115
7ZS5|1|1|G|2116
7ZS5|1|1|A|2117
7ZS5|1|1|C|2118
7ZS5|1|1|A|2119
7ZS5|1|1|A|2120
7ZS5|1|1|G|2121
7ZS5|1|1|G|2122
*
7ZS5|1|1|C|2331
7ZS5|1|1|A|2332
7ZS5|1|1|C|2333
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain BD
- 60S ribosomal protein L3
- Chain BS
- 60S ribosomal protein L19-A
- Chain BW
- 60S ribosomal protein L23-A
- Chain BX
- 60S ribosomal protein L24-A
Coloring options: