J5_7ZS5_005
3D structure
- PDB id
- 7ZS5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 7ZS5|1|1|A|2404, 7ZS5|1|1|A|2817, 7ZS5|1|1|G|2874, 7ZS5|1|1|U|2875, 7ZS5|1|1|U|2978, 7ZS5|1|1|U|2979
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7ZS5|1|1|A|2399
7ZS5|1|1|G|2400
7ZS5|1|1|A|2401
7ZS5|1|1|A|2402
7ZS5|1|1|G|2403
7ZS5|1|1|A|2404
7ZS5|1|1|C|2405
7ZS5|1|1|C|2406
*
7ZS5|1|1|G|2815
7ZS5|1|1|G|2816
7ZS5|1|1|A|2817
7ZS5|1|1|U|2818
7ZS5|1|1|A|2819
7ZS5|1|1|A|2820
7ZS5|1|1|C|2821
7ZS5|1|1|U|2822
7ZS5|1|1|G|2823
*
7ZS5|1|1|C|2867
7ZS5|1|1|U|2868
7ZS5|1|1|U|2869
7ZS5|1|1|C|2870
7ZS5|1|1|G|2871
7ZS5|1|1|A|2872
7ZS5|1|1|U|2873
7ZS5|1|1|G|2874
7ZS5|1|1|U|2875
7ZS5|1|1|C|2876
*
7ZS5|1|1|G|2951
7ZS5|1|1|G|2952
7ZS5|1|1|U|2953
7ZS5|1|1|U|2954
7ZS5|1|1|U|2955
7ZS5|1|1|A|2956
7ZS5|1|1|G|2957
*
7ZS5|1|1|U|2975
7ZS5|1|1|A|2976
7ZS5|1|1|G|2977
7ZS5|1|1|U|2978
7ZS5|1|1|U|2979
7ZS5|1|1|U|2980
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain BC
- 60S ribosomal protein L2-A
- Chain BD
- 60S ribosomal protein L3
- Chain BE
- 60S ribosomal protein L4-A
- Chain BK
- 60S ribosomal protein L10
- Chain BQ
- 60S ribosomal protein L17-A
- Chain Bb
- 60S ribosomal protein L28
- Chain Bc
- 60S ribosomal protein L29
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