J5_7ZUX_004

3D structure

PDB id

7ZUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Collided ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU

Length

44 nucleotides

Bulged bases

7ZUX|1|2|U|128, 7ZUX|1|2|C|130, 7ZUX|1|2|U|132, 7ZUX|1|2|U|134, 7ZUX|1|2|A|135, 7ZUX|1|2|A|140, 7ZUX|1|2|U|141, 7ZUX|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZUX|1|2|A|124
7ZUX|1|2|U|125
7ZUX|1|2|A|126
7ZUX|1|2|G|127
7ZUX|1|2|U|128
7ZUX|1|2|U|129
7ZUX|1|2|C|130
7ZUX|1|2|C|131
7ZUX|1|2|U|132
7ZUX|1|2|U|133
7ZUX|1|2|U|134
7ZUX|1|2|A|135
7ZUX|1|2|C|136
7ZUX|1|2|U|137
7ZUX|1|2|A|138
7ZUX|1|2|C|139
7ZUX|1|2|A|140
7ZUX|1|2|U|141
7ZUX|1|2|G|142
7ZUX|1|2|G|143
*
7ZUX|1|2|C|172
7ZUX|1|2|A|173
7ZUX|1|2|U|174
7ZUX|1|2|G|175
7ZUX|1|2|C|176
7ZUX|1|2|U|177
7ZUX|1|2|U|178
7ZUX|1|2|A|179
7ZUX|1|2|A|180
7ZUX|1|2|A|181
7ZUX|1|2|A|182
*
7ZUX|1|2|U|203
7ZUX|1|2|G|204
*
7ZUX|1|2|C|263
7ZUX|1|2|G|264
7ZUX|1|2|A|265
7ZUX|1|2|A|266
7ZUX|1|2|U|267
*
7ZUX|1|2|A|288
7ZUX|1|2|U|289
7ZUX|1|2|G|290
7ZUX|1|2|G|291
7ZUX|1|2|U|292
7ZUX|1|2|U|293

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain DE

40S ribosomal protein S4-A

Chain DG

40S ribosomal protein S6-A

Chain DI

40S ribosomal protein S8-B