J5_7ZUX_006
3D structure
- PDB id
- 7ZUX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Collided ribosome in a disome unit from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 7ZUX|1|5|U|1437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7ZUX_006 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0665
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
7ZUX|1|5|G|659
7ZUX|1|5|G|660
7ZUX|1|5|A|661
7ZUX|1|5|G|662
7ZUX|1|5|U|663
7ZUX|1|5|C|664
*
7ZUX|1|5|G|800
7ZUX|1|5|G|801
7ZUX|1|5|A|802
7ZUX|1|5|C|803
*
7ZUX|1|5|G|942
7ZUX|1|5|U|943
7ZUX|1|5|U|944
7ZUX|1|5|C|945
*
7ZUX|1|5|G|1376
7ZUX|1|5|C|1377
*
7ZUX|1|5|G|1432
7ZUX|1|5|C|1433
7ZUX|1|5|A|1434
7ZUX|1|5|G|1435
7ZUX|1|5|A|1436
7ZUX|1|5|U|1437
7ZUX|1|5|C|1438
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain EC
- 60S ribosomal protein L4-A
- Chain EK
- 60S ribosomal protein L13-A
- Chain EM
- 60S ribosomal protein L15-A
- Chain EZ
- 60S ribosomal protein L28
- Chain Ed
- 60S ribosomal protein L32
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