J5_7ZUX_008
3D structure
- PDB id
- 7ZUX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Collided ribosome in a disome unit from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 7ZUX|1|5|G|2117, 7ZUX|1|5|G|2122
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7ZUX_008 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.0679
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
7ZUX|1|5|G|1907
7ZUX|1|5|C|1908
7ZUX|1|5|A|1909
7ZUX|1|5|A|1910
7ZUX|1|5|A|1911
7ZUX|1|5|A|1912
7ZUX|1|5|U|1913
7ZUX|1|5|A|1914
7ZUX|1|5|G|1915
*
7ZUX|1|5|U|1939
7ZUX|1|5|G|1940
*
7ZUX|1|5|U|2110
7ZUX|1|5|G|2111
*
7ZUX|1|5|C|2115
7ZUX|1|5|G|2116
7ZUX|1|5|G|2117
7ZUX|1|5|A|2118
7ZUX|1|5|C|2119
7ZUX|1|5|A|2120
7ZUX|1|5|A|2121
7ZUX|1|5|G|2122
7ZUX|1|5|G|2123
*
7ZUX|1|5|C|2332
7ZUX|1|5|A|2333
7ZUX|1|5|C|2334
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain EB
- 60S ribosomal protein L3
- Chain EQ
- 60S ribosomal protein L19-A
- Chain EU
- 60S ribosomal protein L23-A
- Chain EV
- 60S ribosomal protein L24-A
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