J5_7ZW0_004

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU

Length

44 nucleotides

Bulged bases

7ZW0|1|2|U|128, 7ZW0|1|2|C|130, 7ZW0|1|2|U|132, 7ZW0|1|2|U|134, 7ZW0|1|2|A|140, 7ZW0|1|2|U|141, 7ZW0|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZW0|1|2|A|124
7ZW0|1|2|U|125
7ZW0|1|2|A|126
7ZW0|1|2|G|127
7ZW0|1|2|U|128
7ZW0|1|2|U|129
7ZW0|1|2|C|130
7ZW0|1|2|C|131
7ZW0|1|2|U|132
7ZW0|1|2|U|133
7ZW0|1|2|U|134
7ZW0|1|2|A|135
7ZW0|1|2|C|136
7ZW0|1|2|U|137
7ZW0|1|2|A|138
7ZW0|1|2|C|139
7ZW0|1|2|A|140
7ZW0|1|2|U|141
7ZW0|1|2|G|142
7ZW0|1|2|G|143
*
7ZW0|1|2|C|172
7ZW0|1|2|A|173
7ZW0|1|2|U|174
7ZW0|1|2|G|175
7ZW0|1|2|C|176
7ZW0|1|2|U|177
7ZW0|1|2|U|178
7ZW0|1|2|A|179
7ZW0|1|2|A|180
7ZW0|1|2|A|181
7ZW0|1|2|A|182
*
7ZW0|1|2|U|203
7ZW0|1|2|G|204
*
7ZW0|1|2|C|263
7ZW0|1|2|G|264
7ZW0|1|2|A|265
7ZW0|1|2|A|266
7ZW0|1|2|U|267
*
7ZW0|1|2|A|288
7ZW0|1|2|U|289
7ZW0|1|2|G|290
7ZW0|1|2|G|291
7ZW0|1|2|U|292
7ZW0|1|2|U|293

Current chains

Chain 2

18S ribosomal RNA (RDN18-1)

Nearby chains

Chain sS

40S ribosomal protein S4-B

Chain sT

40S ribosomal protein S6-B

Chain sV

40S ribosomal protein S8-A