J5_7ZW0_009
3D structure
- PDB id
- 7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- FAP-80S Complex - Rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 7ZW0|1|LA|G|2116, 7ZW0|1|LA|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_7ZW0_009 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.0513
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
7ZW0|1|LA|G|1906
7ZW0|1|LA|C|1907
7ZW0|1|LA|A|1908
7ZW0|1|LA|A|1909
7ZW0|1|LA|A|1910
7ZW0|1|LA|A|1911
7ZW0|1|LA|U|1912
7ZW0|1|LA|A|1913
7ZW0|1|LA|G|1914
*
7ZW0|1|LA|U|1938
7ZW0|1|LA|G|1939
*
7ZW0|1|LA|U|2109
7ZW0|1|LA|G|2110
*
7ZW0|1|LA|C|2114
7ZW0|1|LA|G|2115
7ZW0|1|LA|G|2116
7ZW0|1|LA|A|2117
7ZW0|1|LA|C|2118
7ZW0|1|LA|A|2119
7ZW0|1|LA|A|2120
7ZW0|1|LA|G|2121
7ZW0|1|LA|G|2122
*
7ZW0|1|LA|C|2331
7ZW0|1|LA|A|2332
7ZW0|1|LA|C|2333
Current chains
- Chain LA
- 25S ribosomal RNA (RDN25-1)
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain LF
- 60S ribosomal protein L3
- Chain LU
- 60S ribosomal protein L19-A
- Chain LY
- 60S ribosomal protein L23-A
- Chain LZ
- 60S ribosomal protein L24-A
- Chain sV
- 40S ribosomal protein S8-A
Coloring options: