J5_8A3D_002
3D structure
- PDB id
- 8A3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.67 Å
Loop
- Sequence
- GGAGU(OMC)*GGAC*GUUC*GCC*GCAGAU(OMC)
- Length
- 24 nucleotides
- Bulged bases
- 8A3D|1|A|C|2289, 8A3D|1|A|U|2350
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8A3D_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0537
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8A3D|1|A|G|1335
8A3D|1|A|G|1336
8A3D|1|A|A|1337
8A3D|1|A|G|1338
8A3D|1|A|U|1339
8A3D|1|A|OMC|1340
*
8A3D|1|A|G|1516
8A3D|1|A|G|1517
8A3D|1|A|A|1518
8A3D|1|A|C|1519
*
8A3D|1|A|G|1658
8A3D|1|A|U|1659
8A3D|1|A|U|1660
8A3D|1|A|C|1661
*
8A3D|1|A|G|2288
8A3D|1|A|C|2289
8A3D|1|A|C|2290
*
8A3D|1|A|G|2345
8A3D|1|A|C|2346
8A3D|1|A|A|2347
8A3D|1|A|G|2348
8A3D|1|A|A|2349
8A3D|1|A|U|2350
8A3D|1|A|OMC|2351
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F
- 60S ribosomal protein L4
- Chain U
- 60S ribosomal protein L27a
- Chain Y
- 60S ribosomal protein L32
- Chain k
- 60S ribosomal protein L28
- Chain l
- 60S ribosomal protein L15
- Chain r
- 60S ribosomal protein L13
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