J5_8A3D_004
3D structure
- PDB id
- 8A3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.67 Å
Loop
- Sequence
- AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)U(PSU)AG*(PSU)AGUUU
- Length
- 40 nucleotides
- Bulged bases
- 8A3D|1|A|A|3908, 8A3D|1|A|A|4394, 8A3D|1|A|U|4450, 8A3D|1|A|G|4451, 8A3D|1|A|U|4555, 8A3D|1|A|U|4556
- QA status
- Modified nucleotides: OMG, 5MC, UR3, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8A3D|1|A|A|3903
8A3D|1|A|G|3904
8A3D|1|A|A|3905
8A3D|1|A|A|3906
8A3D|1|A|G|3907
8A3D|1|A|A|3908
8A3D|1|A|C|3909
8A3D|1|A|C|3910
*
8A3D|1|A|OMG|4392
8A3D|1|A|G|4393
8A3D|1|A|A|4394
8A3D|1|A|U|4395
8A3D|1|A|A|4396
8A3D|1|A|A|4397
8A3D|1|A|C|4398
8A3D|1|A|U|4399||A
8A3D|1|A|G|4400
*
8A3D|1|A|C|4444
8A3D|1|A|U|4445
8A3D|1|A|U|4446
8A3D|1|A|5MC|4447
8A3D|1|A|G|4448
8A3D|1|A|A|4449
8A3D|1|A|U|4450
8A3D|1|A|G|4451
8A3D|1|A|U|4452
8A3D|1|A|C|4453
*
8A3D|1|A|G|4528
8A3D|1|A|G|4529
8A3D|1|A|UR3|4530
8A3D|1|A|U|4531
8A3D|1|A|PSU|4532
8A3D|1|A|A|4533
8A3D|1|A|G|4534
*
8A3D|1|A|PSU|4552
8A3D|1|A|A|4553
8A3D|1|A|G|4554
8A3D|1|A|U|4555
8A3D|1|A|U|4556
8A3D|1|A|U|4557
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain D
- 60S ribosomal protein L8
- Chain E
- 60S ribosomal protein L3
- Chain F
- 60S ribosomal protein L4
- Chain J
- 60S ribosomal protein L17
- Chain U
- 60S ribosomal protein L27a
- Chain V
- 60S ribosomal protein L29
- Chain p
- 60S ribosomal protein L10
Coloring options: