J5_8A3L_004

3D structure

PDB id

8A3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into the binding of bS1 to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8A3L|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8A3L_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.088

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8A3L|1|a|C|47
8A3L|1|a|G|48
8A3L|1|a|A|49
8A3L|1|a|U|50
8A3L|1|a|G|51
8A3L|1|a|A|52
8A3L|1|a|A|53
8A3L|1|a|G|54
*
8A3L|1|a|C|116
8A3L|1|a|G|117
8A3L|1|a|A|118
8A3L|1|a|A|119
8A3L|1|a|U|120
8A3L|1|a|G|121
*
8A3L|1|a|C|130
8A3L|1|a|A|131
*
8A3L|1|a|U|148
8A3L|1|a|A|149
8A3L|1|a|U|150
*
8A3L|1|a|A|176
8A3L|1|a|G|177
8A3L|1|a|G|178

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34