J5_8A57_006
3D structure
- PDB id
- 8A57 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 8A57|1|A|A|2481, 8A57|1|A|U|2482, 8A57|1|A|U|2539, 8A57|1|A|U|2642, 8A57|1|A|C|2643
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8A57|1|A|G|2090
8A57|1|A|A|2091
8A57|1|A|A|2092
8A57|1|A|A|2093
8A57|1|A|G|2094
8A57|1|A|A|2095
8A57|1|A|C|2096
8A57|1|A|C|2097
*
8A57|1|A|G|2479
8A57|1|A|G|2480
8A57|1|A|A|2481
8A57|1|A|U|2482
8A57|1|A|A|2483
8A57|1|A|A|2484
8A57|1|A|C|2485
8A57|1|A|A|2486
*
8A57|1|A|U|2533
8A57|1|A|C|2534
8A57|1|A|G|2535
8A57|1|A|A|2536
8A57|1|A|U|2537
8A57|1|A|G|2538
8A57|1|A|U|2539
8A57|1|A|C|2540
*
8A57|1|A|G|2615
8A57|1|A|G|2616
8A57|1|A|U|2617
8A57|1|A|U|2618
8A57|1|A|C|2619
8A57|1|A|A|2620
8A57|1|A|G|2621
*
8A57|1|A|C|2639
8A57|1|A|G|2640
8A57|1|A|G|2641
8A57|1|A|U|2642
8A57|1|A|C|2643
8A57|1|A|C|2644
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 5
- 50S ribosomal protein L32-2
- Chain D
- GTPase HflX
- Chain G
- 50S ribosomal protein L2
- Chain H
- 50S ribosomal protein L3
- Chain I
- 50S ribosomal protein L4
- Chain O
- 50S ribosomal protein L15
- Chain P
- 50S ribosomal protein L16
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