3D structure

PDB id
8AGV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast RQC complex in state H
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
GCAAAAUAG*UG*UG*CGGACAAGG*CAC
Length
25 nucleotides
Bulged bases
8AGV|1|f|G|2116, 8AGV|1|f|G|2121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8AGV_004 not in the Motif Atlas
Homologous match to J5_8P9A_013
Geometric discrepancy: 0.0606
The information below is about J5_8P9A_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

8AGV|1|f|G|1906
8AGV|1|f|C|1907
8AGV|1|f|A|1908
8AGV|1|f|A|1909
8AGV|1|f|A|1910
8AGV|1|f|A|1911
8AGV|1|f|U|1912
8AGV|1|f|A|1913
8AGV|1|f|G|1914
*
8AGV|1|f|U|1938
8AGV|1|f|G|1939
*
8AGV|1|f|U|2109
8AGV|1|f|G|2110
*
8AGV|1|f|C|2114
8AGV|1|f|G|2115
8AGV|1|f|G|2116
8AGV|1|f|A|2117
8AGV|1|f|C|2118
8AGV|1|f|A|2119
8AGV|1|f|A|2120
8AGV|1|f|G|2121
8AGV|1|f|G|2122
*
8AGV|1|f|C|2331
8AGV|1|f|A|2332
8AGV|1|f|C|2333

Current chains

Chain f
25S rRNA

Nearby chains

Chain E
60S ribosomal protein L19-A
Chain I
60S ribosomal protein L23-A
Chain J
60S ribosomal protein L24-A
Chain k
60S ribosomal protein L3

Coloring options:


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