J5_8AGV_005
3D structure
- PDB id
- 8AGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state H
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 8AGV|1|f|A|2404, 8AGV|1|f|A|2817, 8AGV|1|f|U|2873, 8AGV|1|f|G|2874, 8AGV|1|f|U|2978, 8AGV|1|f|U|2979
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8AGV|1|f|A|2399
8AGV|1|f|G|2400
8AGV|1|f|A|2401
8AGV|1|f|A|2402
8AGV|1|f|G|2403
8AGV|1|f|A|2404
8AGV|1|f|C|2405
8AGV|1|f|C|2406
*
8AGV|1|f|G|2815
8AGV|1|f|G|2816
8AGV|1|f|A|2817
8AGV|1|f|U|2818
8AGV|1|f|A|2819
8AGV|1|f|A|2820
8AGV|1|f|C|2821
8AGV|1|f|U|2822
8AGV|1|f|G|2823
*
8AGV|1|f|C|2867
8AGV|1|f|U|2868
8AGV|1|f|U|2869
8AGV|1|f|C|2870
8AGV|1|f|G|2871
8AGV|1|f|A|2872
8AGV|1|f|U|2873
8AGV|1|f|G|2874
8AGV|1|f|U|2875||A
8AGV|1|f|C|2876
*
8AGV|1|f|G|2951
8AGV|1|f|G|2952
8AGV|1|f|U|2953
8AGV|1|f|U|2954
8AGV|1|f|U|2955
8AGV|1|f|A|2956
8AGV|1|f|G|2957
*
8AGV|1|f|U|2975
8AGV|1|f|A|2976
8AGV|1|f|G|2977
8AGV|1|f|U|2978
8AGV|1|f|U|2979
8AGV|1|f|U|2980
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain 1
- CAT-tailed nascent peptide
- Chain C
- 60S ribosomal protein L17-A
- Chain O
- 60S ribosomal protein L29
- Chain j
- 60S ribosomal protein L2-A
- Chain k
- 60S ribosomal protein L3
- Chain l
- 60S ribosomal protein L4-A
- Chain r
- 60S ribosomal protein L10
- Chain v
- Eukaryotic translation initiation factor 5A-1
- Chain x
- Transfer RNA; tRNA
- Chain y
- Transfer RNA; tRNA
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