J5_8AGX_006
3D structure
- PDB id
- 8AGX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the IN position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 8AGX|1|f|G|2418, 8AGX|1|f|A|2799, 8AGX|1|f|G|2800, 8AGX|1|f|A|2801, 8AGX|1|f|A|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8AGX_006 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.2411
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
8AGX|1|f|U|2416
8AGX|1|f|U|2417
8AGX|1|f|G|2418
8AGX|1|f|A|2419
*
8AGX|1|f|U|2611
8AGX|1|f|U|2612
8AGX|1|f|U|2613
8AGX|1|f|G|2614
*
8AGX|1|f|C|2627
8AGX|1|f|A|2628
*
8AGX|1|f|U|2650
8AGX|1|f|G|2651
*
8AGX|1|f|C|2798
8AGX|1|f|A|2799
8AGX|1|f|G|2800
8AGX|1|f|A|2801
8AGX|1|f|A|2802
8AGX|1|f|A|2803
8AGX|1|f|A|2804
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L15-A
- Chain D
- 60S ribosomal protein L18-A
- Chain G
- 60S ribosomal protein L21-A
- Chain N
- 60S ribosomal protein L28
- Chain O
- 60S ribosomal protein L29
- Chain b
- 60S ribosomal protein L42-A
- Chain j
- 60S ribosomal protein L2-A
- Chain v
- Eukaryotic translation initiation factor 5A-1
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