J5_8AKN_008
3D structure
- PDB id
- 8AKN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 8AKN|1|a|A|2448, 8AKN|1|a|H2U|2449, 8AKN|1|a|U|2609
- QA status
- Modified nucleotides: H2U, 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8AKN|1|a|G|2057
8AKN|1|a|A|2058
8AKN|1|a|A|2059
8AKN|1|a|A|2060
8AKN|1|a|G|2061
8AKN|1|a|A|2062
8AKN|1|a|C|2063
8AKN|1|a|C|2064
*
8AKN|1|a|G|2446
8AKN|1|a|G|2447
8AKN|1|a|A|2448
8AKN|1|a|H2U|2449
8AKN|1|a|A|2450
8AKN|1|a|A|2451
8AKN|1|a|C|2452
8AKN|1|a|A|2453
*
8AKN|1|a|U|2500
8AKN|1|a|C|2501
8AKN|1|a|G|2502
8AKN|1|a|2MA|2503
8AKN|1|a|PSU|2504
8AKN|1|a|G|2505
8AKN|1|a|U|2506
8AKN|1|a|C|2507
*
8AKN|1|a|G|2582
8AKN|1|a|G|2583
8AKN|1|a|U|2584
8AKN|1|a|U|2585
8AKN|1|a|U|2586
8AKN|1|a|A|2587
8AKN|1|a|G|2588
*
8AKN|1|a|C|2606
8AKN|1|a|G|2607
8AKN|1|a|G|2608
8AKN|1|a|U|2609
8AKN|1|a|C|2610
8AKN|1|a|C|2611
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain A
- Drosocin1
- Chain W
- Peptide chain release factor RF1
- Chain X
- Transfer RNA; tRNA
- Chain c
- 50S ribosomal protein L2
- Chain d
- 50S ribosomal protein L3
- Chain e
- 50S ribosomal protein L4
- Chain k
- 50S ribosomal protein L15
- Chain l
- 50S ribosomal protein L16
- Chain r
- 50S ribosomal protein L22
- Chain z
- 50S ribosomal protein L32
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