J5_8AM9_001
3D structure
- PDB id
- 8AM9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUGG*CGUG*CUUUC*GAAG*CAAG
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8AM9_001 not in the Motif Atlas
- Homologous match to J5_5J7L_001
- Geometric discrepancy: 0.075
- The information below is about J5_5J7L_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_92941.1
- Basepair signature
- cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
8AM9|1|B|C|36
8AM9|1|B|U|37
8AM9|1|B|G|38
8AM9|1|B|G|39
*
8AM9|1|B|C|403
8AM9|1|B|G|404
8AM9|1|B|U|405
8AM9|1|B|G|406
*
8AM9|1|B|C|436
8AM9|1|B|U|437
8AM9|1|B|U|438
8AM9|1|B|U|439
8AM9|1|B|C|440
*
8AM9|1|B|G|497
8AM9|1|B|A|498
8AM9|1|B|A|499
8AM9|1|B|G|500
*
8AM9|1|B|C|545
8AM9|1|B|A|546
8AM9|1|B|A|547
8AM9|1|B|G|548
Current chains
- Chain B
- 16S ribosomal RNA
Nearby chains
- Chain E
- 30S ribosomal protein S4
- Chain M
- 30S ribosomal protein S12
Coloring options: