J5_8ANA_001

3D structure

PDB id

8ANA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8ANA|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8ANA_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0371

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8ANA|1|a|C|47
8ANA|1|a|G|48
8ANA|1|a|A|49
8ANA|1|a|U|50
8ANA|1|a|G|51
8ANA|1|a|A|52
8ANA|1|a|A|53
8ANA|1|a|G|54
*
8ANA|1|a|C|116
8ANA|1|a|G|117
8ANA|1|a|A|118
8ANA|1|a|A|119
8ANA|1|a|U|120
8ANA|1|a|G|121
*
8ANA|1|a|C|130
8ANA|1|a|A|131
*
8ANA|1|a|U|148
8ANA|1|a|A|149
8ANA|1|a|U|150
*
8ANA|1|a|A|176
8ANA|1|a|G|177
8ANA|1|a|G|178

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34