J5_8AP4_001

3D structure

PDB id

8AP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherischia coli heat shock protein Hsp15 in complex with ribosomal 50S subunits bearing peptidyl-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8AP4|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8AP4_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0662

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8AP4|1|a|C|47
8AP4|1|a|G|48
8AP4|1|a|A|49
8AP4|1|a|U|50
8AP4|1|a|G|51
8AP4|1|a|A|52
8AP4|1|a|A|53
8AP4|1|a|G|54
*
8AP4|1|a|C|116
8AP4|1|a|G|117
8AP4|1|a|A|118
8AP4|1|a|A|119
8AP4|1|a|U|120
8AP4|1|a|G|121
*
8AP4|1|a|C|130
8AP4|1|a|A|131
*
8AP4|1|a|U|148
8AP4|1|a|A|149
8AP4|1|a|U|150
*
8AP4|1|a|A|176
8AP4|1|a|G|177
8AP4|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34