3D structure

PDB id
8AP4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Escherischia coli heat shock protein Hsp15 in complex with ribosomal 50S subunits bearing peptidyl-tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GAAAGACC*GGAUAACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC
Length
37 nucleotides
Bulged bases
8AP4|1|a|A|2062, 8AP4|1|a|A|2448, 8AP4|1|a|U|2449, 8AP4|1|a|U|2609
QA status
Modified nucleotides: 2MA, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8AP4|1|a|G|2057
8AP4|1|a|A|2058
8AP4|1|a|A|2059
8AP4|1|a|A|2060
8AP4|1|a|G|2061
8AP4|1|a|A|2062
8AP4|1|a|C|2063
8AP4|1|a|C|2064
*
8AP4|1|a|G|2446
8AP4|1|a|G|2447
8AP4|1|a|A|2448
8AP4|1|a|U|2449
8AP4|1|a|A|2450
8AP4|1|a|A|2451
8AP4|1|a|C|2452
8AP4|1|a|A|2453
*
8AP4|1|a|U|2500
8AP4|1|a|C|2501
8AP4|1|a|G|2502
8AP4|1|a|2MA|2503
8AP4|1|a|PSU|2504
8AP4|1|a|G|2505
8AP4|1|a|U|2506
8AP4|1|a|C|2507
*
8AP4|1|a|G|2582
8AP4|1|a|G|2583
8AP4|1|a|U|2584
8AP4|1|a|U|2585
8AP4|1|a|U|2586
8AP4|1|a|A|2587
8AP4|1|a|G|2588
*
8AP4|1|a|C|2606
8AP4|1|a|G|2607
8AP4|1|a|G|2608
8AP4|1|a|U|2609
8AP4|1|a|C|2610
8AP4|1|a|C|2611

Current chains

Chain a
23S rRNA

Nearby chains

Chain Z
Transfer RNA; tRNA
Chain c
50S ribosomal protein L2
Chain d
50S ribosomal protein L3
Chain e
50S ribosomal protein L4
Chain k
50S ribosomal protein L15
Chain l
50S ribosomal protein L16
Chain r
50S ribosomal protein L22
Chain z
50S ribosomal protein L32

Coloring options:

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