J5_8AYE_004

3D structure

PDB id

8AYE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to thermorubin and fMet-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.96 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8AYE|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8AYE_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0373

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8AYE|1|a|C|47
8AYE|1|a|G|48
8AYE|1|a|A|49
8AYE|1|a|U|50
8AYE|1|a|G|51
8AYE|1|a|A|52
8AYE|1|a|A|53
8AYE|1|a|G|54
*
8AYE|1|a|C|116
8AYE|1|a|G|117
8AYE|1|a|A|118
8AYE|1|a|A|119
8AYE|1|a|U|120
8AYE|1|a|G|121
*
8AYE|1|a|C|130
8AYE|1|a|A|131
*
8AYE|1|a|U|148
8AYE|1|a|A|149
8AYE|1|a|U|150
*
8AYE|1|a|A|176
8AYE|1|a|G|177
8AYE|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34