J5_8B6C_004
3D structure
- PDB id
- 8B6C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.79 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUU(5MC)GA(PSU)GUC*GG(UR3)(PSU)UAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 8B6C|1|5|A|3640, 8B6C|1|5|A|4140, 8B6C|1|5|G|4197, 8B6C|1|5|U|4198, 8B6C|1|5|U|4301, 8B6C|1|5|U|4302
- QA status
- Modified nucleotides: 5MC, PSU, UR3
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8B6C|1|5|A|3635
8B6C|1|5|G|3636
8B6C|1|5|A|3637
8B6C|1|5|A|3638
8B6C|1|5|G|3639
8B6C|1|5|A|3640
8B6C|1|5|C|3641
8B6C|1|5|C|3642
*
8B6C|1|5|G|4138
8B6C|1|5|G|4139
8B6C|1|5|A|4140
8B6C|1|5|U|4141
8B6C|1|5|A|4142
8B6C|1|5|A|4143
8B6C|1|5|C|4144
8B6C|1|5|U|4145
8B6C|1|5|G|4146
*
8B6C|1|5|C|4190
8B6C|1|5|U|4191
8B6C|1|5|U|4192
8B6C|1|5|5MC|4193
8B6C|1|5|G|4194
8B6C|1|5|A|4195
8B6C|1|5|PSU|4196
8B6C|1|5|G|4197
8B6C|1|5|U|4198
8B6C|1|5|C|4199
*
8B6C|1|5|G|4274
8B6C|1|5|G|4275
8B6C|1|5|UR3|4276
8B6C|1|5|PSU|4277
8B6C|1|5|U|4278
8B6C|1|5|A|4279
8B6C|1|5|G|4280
*
8B6C|1|5|U|4298
8B6C|1|5|A|4299
8B6C|1|5|G|4300
8B6C|1|5|U|4301
8B6C|1|5|U|4302
8B6C|1|5|U|4303
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain B
- Ribosomal protein L3
- Chain C
- 60S ribosomal protein L4
- Chain a
- 60S ribosomal protein L27a
- Chain b
- 60S ribosomal protein L29
Coloring options: