J5_8B6C_005
3D structure
- PDB id
- 8B6C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.79 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 8B6C|1|5|G|3654, 8B6C|1|5|A|4122, 8B6C|1|5|G|4123, 8B6C|1|5|A|4124, 8B6C|1|5|A|4125
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8B6C_005 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.3012
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
8B6C|1|5|U|3652
8B6C|1|5|U|3653
8B6C|1|5|G|3654
8B6C|1|5|A|3655
*
8B6C|1|5|U|3934
8B6C|1|5|U|3935
8B6C|1|5|U|3936
8B6C|1|5|G|3937
*
8B6C|1|5|C|3950
8B6C|1|5|A|3951
*
8B6C|1|5|U|3973
8B6C|1|5|G|3974
*
8B6C|1|5|C|4121
8B6C|1|5|A|4122
8B6C|1|5|G|4123
8B6C|1|5|A|4124
8B6C|1|5|A|4125
8B6C|1|5|A|4126
8B6C|1|5|A|4127
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain N
- Ribosomal protein L15
- Chain Q
- eL18
- Chain T
- 60S ribosomal protein L21
- Chain a
- 60S ribosomal protein L27a
- Chain b
- 60S ribosomal protein L29
- Chain o
- 60S ribosomal protein L36a-like
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