J5_8B7Y_001

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8B7Y_001 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.1165

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

8B7Y|1|C|C|36
8B7Y|1|C|U|37
8B7Y|1|C|G|38
8B7Y|1|C|G|39
*
8B7Y|1|C|C|403
8B7Y|1|C|G|404
8B7Y|1|C|U|405
8B7Y|1|C|G|406
*
8B7Y|1|C|C|436
8B7Y|1|C|U|437
8B7Y|1|C|U|438
8B7Y|1|C|U|439
8B7Y|1|C|C|440
*
8B7Y|1|C|G|497
8B7Y|1|C|A|498
8B7Y|1|C|A|499
8B7Y|1|C|G|500
*
8B7Y|1|C|C|545
8B7Y|1|C|A|546
8B7Y|1|C|A|547
8B7Y|1|C|G|548

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain F

30S ribosomal protein S4

Chain q

30S ribosomal protein S12