J5_8B7Y_003
3D structure
- PDB id
- 8B7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8B7Y|1|C|A|109, 8B7Y|1|C|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8B7Y_003 not in the Motif Atlas
- Homologous match to J5_5J7L_003
- Geometric discrepancy: 0.1026
- The information below is about J5_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8B7Y|1|C|C|58
8B7Y|1|C|A|59
8B7Y|1|C|A|60
8B7Y|1|C|G|61
*
8B7Y|1|C|C|106
8B7Y|1|C|G|107
8B7Y|1|C|G|108
8B7Y|1|C|A|109
8B7Y|1|C|C|110
8B7Y|1|C|G|111
8B7Y|1|C|G|112
8B7Y|1|C|G|113
*
8B7Y|1|C|C|314
8B7Y|1|C|A|315
8B7Y|1|C|C|316
*
8B7Y|1|C|G|337
8B7Y|1|C|A|338
8B7Y|1|C|C|339
*
8B7Y|1|C|G|350
8B7Y|1|C|G|351
8B7Y|1|C|C|352
8B7Y|1|C|A|353
8B7Y|1|C|G|354
Current chains
- Chain C
- 16S ribosomal RNA
Nearby chains
- Chain S
- 50S ribosomal protein L14
- Chain X
- 50S ribosomal protein L19
- Chain u
- 30S ribosomal protein S16
- Chain y
- 30S ribosomal protein S20
Coloring options: