J5_8B7Y_008
3D structure
- PDB id
- 8B7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCG(2MA)(PSU)GU*GUUUAG*CGGUCC
- Length
- 35 nucleotides
- Bulged bases
- 8B7Y|1|I|A|2062, 8B7Y|1|I|A|2448, 8B7Y|1|I|U|2449, 8B7Y|1|I|U|2609
- QA status
- Modified nucleotides: 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8B7Y|1|I|G|2057
8B7Y|1|I|A|2058
8B7Y|1|I|A|2059
8B7Y|1|I|A|2060
8B7Y|1|I|G|2061
8B7Y|1|I|A|2062
8B7Y|1|I|C|2063
8B7Y|1|I|C|2064
*
8B7Y|1|I|G|2446
8B7Y|1|I|G|2447
8B7Y|1|I|A|2448
8B7Y|1|I|U|2449
8B7Y|1|I|A|2450
8B7Y|1|I|A|2451
8B7Y|1|I|C|2452
8B7Y|1|I|A|2453
*
8B7Y|1|I|U|2500
8B7Y|1|I|C|2501
8B7Y|1|I|G|2502
8B7Y|1|I|2MA|2503
8B7Y|1|I|PSU|2504
8B7Y|1|I|G|2505
8B7Y|1|I|U|2506
*
8B7Y|1|I|G|2583
8B7Y|1|I|U|2584
8B7Y|1|I|U|2585
8B7Y|1|I|U|2586
8B7Y|1|I|A|2587
8B7Y|1|I|G|2588
*
8B7Y|1|I|C|2606
8B7Y|1|I|G|2607
8B7Y|1|I|G|2608
8B7Y|1|I|U|2609
8B7Y|1|I|C|2610
8B7Y|1|I|C|2611
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain K
- 50S ribosomal protein L2
- Chain L
- 50S ribosomal protein L3
- Chain M
- 50S ribosomal protein L4
- Chain T
- 50S ribosomal protein L15
- Chain U
- 50S ribosomal protein L16
- Chain a
- 50S ribosomal protein L22
- Chain i
- 50S ribosomal protein L32
- Chain n
- Transfer RNA; tRNA
- Chain z
- Myxovalargin B
Coloring options: