J5_8BF7_008

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8BF7_008 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.1257

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

8BF7|1|2|C|36
8BF7|1|2|U|37
8BF7|1|2|G|38
8BF7|1|2|G|39
*
8BF7|1|2|C|403
8BF7|1|2|G|404
8BF7|1|2|U|405
8BF7|1|2|G|406
*
8BF7|1|2|C|436
8BF7|1|2|U|437
8BF7|1|2|U|438
8BF7|1|2|U|439
8BF7|1|2|C|440
8BF7|1|2|A|441
8BF7|1|2|G|442
*
8BF7|1|2|C|492
8BF7|1|2|A|493
8BF7|1|2|G|494
8BF7|1|2|A|495
8BF7|1|2|A|496
8BF7|1|2|G|497
8BF7|1|2|A|498
8BF7|1|2|A|499
8BF7|1|2|G|500
*
8BF7|1|2|C|545
8BF7|1|2|A|546
8BF7|1|2|A|547
8BF7|1|2|G|548

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain h

30S ribosomal protein S4

Chain p

30S ribosomal protein S12