J5_8BGE_005
3D structure
- PDB id
- 8BGE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 8BGE|1|0|A|2062, 8BGE|1|0|A|2448, 8BGE|1|0|U|2449, 8BGE|1|0|U|2506, 8BGE|1|0|U|2609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BGE|1|0|G|2057
8BGE|1|0|A|2058
8BGE|1|0|A|2059
8BGE|1|0|A|2060
8BGE|1|0|G|2061
8BGE|1|0|A|2062
8BGE|1|0|C|2063
8BGE|1|0|C|2064
*
8BGE|1|0|G|2446
8BGE|1|0|G|2447
8BGE|1|0|A|2448
8BGE|1|0|U|2449
8BGE|1|0|A|2450
8BGE|1|0|A|2451
8BGE|1|0|C|2452
8BGE|1|0|A|2453
*
8BGE|1|0|U|2500
8BGE|1|0|C|2501
8BGE|1|0|G|2502
8BGE|1|0|A|2503
8BGE|1|0|U|2504
8BGE|1|0|G|2505
8BGE|1|0|U|2506
8BGE|1|0|C|2507
*
8BGE|1|0|G|2582
8BGE|1|0|G|2583
8BGE|1|0|U|2584
8BGE|1|0|U|2585
8BGE|1|0|U|2586
8BGE|1|0|A|2587
8BGE|1|0|G|2588
*
8BGE|1|0|C|2606
8BGE|1|0|G|2607
8BGE|1|0|G|2608
8BGE|1|0|U|2609
8BGE|1|0|C|2610
8BGE|1|0|C|2611
Current chains
- Chain 0
- 23S rRNA RRLG-RRNA
Nearby chains
- Chain 4
- Transfer RNA; tRNA
- Chain A
- 50S ribosomal protein L2
- Chain B
- 50S ribosomal protein L3
- Chain C
- 50S ribosomal protein L4
- Chain I
- 50S ribosomal protein L15
- Chain J
- 50S ribosomal protein L16
- Chain P
- 50S ribosomal protein L22
- Chain a
- 50S ribosomal protein L32
Coloring options: