J5_8BGE_008

3D structure

PDB id

8BGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8BGE_008 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.1097

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

8BGE|1|2|C|36
8BGE|1|2|U|37
8BGE|1|2|G|38
8BGE|1|2|G|39
*
8BGE|1|2|C|403
8BGE|1|2|G|404
8BGE|1|2|U|405
8BGE|1|2|G|406
*
8BGE|1|2|C|436
8BGE|1|2|U|437
8BGE|1|2|U|438
8BGE|1|2|U|439
8BGE|1|2|C|440
8BGE|1|2|A|441
8BGE|1|2|G|442
*
8BGE|1|2|C|492
8BGE|1|2|A|493
8BGE|1|2|G|494
8BGE|1|2|A|495
8BGE|1|2|A|496
8BGE|1|2|G|497
8BGE|1|2|A|498
8BGE|1|2|A|499
8BGE|1|2|G|500
*
8BGE|1|2|C|545
8BGE|1|2|A|546
8BGE|1|2|A|547
8BGE|1|2|G|548

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain h

30S ribosomal protein S4

Chain p

30S ribosomal protein S12