J5_8BGH_006

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8BGH_006 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.1384

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

8BGH|1|2|C|36
8BGH|1|2|U|37
8BGH|1|2|G|38
8BGH|1|2|G|39
*
8BGH|1|2|C|403
8BGH|1|2|G|404
8BGH|1|2|U|405
8BGH|1|2|G|406
*
8BGH|1|2|C|436
8BGH|1|2|U|437
8BGH|1|2|U|438
8BGH|1|2|U|439
8BGH|1|2|C|440
*
8BGH|1|2|G|497
8BGH|1|2|A|498
8BGH|1|2|A|499
8BGH|1|2|G|500
*
8BGH|1|2|C|545
8BGH|1|2|A|546
8BGH|1|2|A|547
8BGH|1|2|G|548

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain h

30S ribosomal protein S4

Chain p

30S ribosomal protein S12