J5_8BH4_004

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GAAAGACC*GGAUAACAG*CCUCGAUGUC*GGUUUAG*CGGUCC

Length

40 nucleotides

Bulged bases

8BH4|1|0|A|2062, 8BH4|1|0|A|2448, 8BH4|1|0|U|2449, 8BH4|1|0|U|2506, 8BH4|1|0|U|2609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BH4|1|0|G|2057
8BH4|1|0|A|2058
8BH4|1|0|A|2059
8BH4|1|0|A|2060
8BH4|1|0|G|2061
8BH4|1|0|A|2062
8BH4|1|0|C|2063
8BH4|1|0|C|2064
*
8BH4|1|0|G|2446
8BH4|1|0|G|2447
8BH4|1|0|A|2448
8BH4|1|0|U|2449
8BH4|1|0|A|2450
8BH4|1|0|A|2451
8BH4|1|0|C|2452
8BH4|1|0|A|2453
8BH4|1|0|G|2454
*
8BH4|1|0|C|2498
8BH4|1|0|C|2499
8BH4|1|0|U|2500
8BH4|1|0|C|2501
8BH4|1|0|G|2502
8BH4|1|0|A|2503
8BH4|1|0|U|2504
8BH4|1|0|G|2505
8BH4|1|0|U|2506
8BH4|1|0|C|2507
*
8BH4|1|0|G|2582
8BH4|1|0|G|2583
8BH4|1|0|U|2584
8BH4|1|0|U|2585
8BH4|1|0|U|2586
8BH4|1|0|A|2587
8BH4|1|0|G|2588
*
8BH4|1|0|C|2606
8BH4|1|0|G|2607
8BH4|1|0|G|2608
8BH4|1|0|U|2609
8BH4|1|0|C|2610
8BH4|1|0|C|2611

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain 4

Transfer RNA; tRNA

Chain 5

Transfer RNA; tRNA

Chain 6

fMet-Lys dipeptide

Chain A

50S ribosomal protein L2

Chain B

50S ribosomal protein L3

Chain C

50S ribosomal protein L4

Chain I

50S ribosomal protein L15

Chain J

50S ribosomal protein L16

Chain P

50S ribosomal protein L22

Chain a

50S ribosomal protein L32