J5_8BH4_006

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8BH4_006 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.1355

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

8BH4|1|2|C|36
8BH4|1|2|U|37
8BH4|1|2|G|38
8BH4|1|2|G|39
*
8BH4|1|2|C|403
8BH4|1|2|G|404
8BH4|1|2|U|405
8BH4|1|2|G|406
*
8BH4|1|2|C|436
8BH4|1|2|U|437
8BH4|1|2|U|438
8BH4|1|2|U|439
8BH4|1|2|C|440
*
8BH4|1|2|G|497
8BH4|1|2|A|498
8BH4|1|2|A|499
8BH4|1|2|G|500
*
8BH4|1|2|C|545
8BH4|1|2|A|546
8BH4|1|2|A|547
8BH4|1|2|G|548

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain h

30S ribosomal protein S4

Chain p

30S ribosomal protein S12