3D structure

PDB id
8BHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.81 Å

Loop

Sequence
CGAUGAAG*CGAAUG*CA*UAU*AGG
Length
22 nucleotides
Bulged bases
8BHJ|1|0|U|50
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8BHJ_001 not in the Motif Atlas
Homologous match to J5_5J7L_013
Geometric discrepancy: 0.1423
The information below is about J5_5J7L_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_01737.2
Basepair signature
cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

8BHJ|1|0|C|47
8BHJ|1|0|G|48
8BHJ|1|0|A|49
8BHJ|1|0|U|50
8BHJ|1|0|G|51
8BHJ|1|0|A|52
8BHJ|1|0|A|53
8BHJ|1|0|G|54
*
8BHJ|1|0|C|116
8BHJ|1|0|G|117
8BHJ|1|0|A|118
8BHJ|1|0|A|119
8BHJ|1|0|U|120
8BHJ|1|0|G|121
*
8BHJ|1|0|C|130
8BHJ|1|0|A|131
*
8BHJ|1|0|U|148
8BHJ|1|0|A|149
8BHJ|1|0|U|150
*
8BHJ|1|0|A|176
8BHJ|1|0|G|177
8BHJ|1|0|G|178

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain c
50S ribosomal protein L34

Coloring options:


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