J5_8BHJ_001

3D structure

PDB id

8BHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8BHJ|1|0|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8BHJ_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1423

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8BHJ|1|0|C|47
8BHJ|1|0|G|48
8BHJ|1|0|A|49
8BHJ|1|0|U|50
8BHJ|1|0|G|51
8BHJ|1|0|A|52
8BHJ|1|0|A|53
8BHJ|1|0|G|54
*
8BHJ|1|0|C|116
8BHJ|1|0|G|117
8BHJ|1|0|A|118
8BHJ|1|0|A|119
8BHJ|1|0|U|120
8BHJ|1|0|G|121
*
8BHJ|1|0|C|130
8BHJ|1|0|A|131
*
8BHJ|1|0|U|148
8BHJ|1|0|A|149
8BHJ|1|0|U|150
*
8BHJ|1|0|A|176
8BHJ|1|0|G|177
8BHJ|1|0|G|178

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain c

50S ribosomal protein L34