3D structure

PDB id
8BHL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation
Experimental method
ELECTRON MICROSCOPY
Resolution
2.21 Å

Loop

Sequence
CGAUGAAG*CGAAUG*CA*UAU*AGG
Length
22 nucleotides
Bulged bases
8BHL|1|0|U|50
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8BHL_001 not in the Motif Atlas
Homologous match to J5_5J7L_013
Geometric discrepancy: 0.1333
The information below is about J5_5J7L_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_01737.2
Basepair signature
cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

8BHL|1|0|C|47
8BHL|1|0|G|48
8BHL|1|0|A|49
8BHL|1|0|U|50
8BHL|1|0|G|51
8BHL|1|0|A|52
8BHL|1|0|A|53
8BHL|1|0|G|54
*
8BHL|1|0|C|116
8BHL|1|0|G|117
8BHL|1|0|A|118
8BHL|1|0|A|119
8BHL|1|0|U|120
8BHL|1|0|G|121
*
8BHL|1|0|C|130
8BHL|1|0|A|131
*
8BHL|1|0|U|148
8BHL|1|0|A|149
8BHL|1|0|U|150
*
8BHL|1|0|A|176
8BHL|1|0|G|177
8BHL|1|0|G|178

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain c
50S ribosomal protein L34

Coloring options:


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