J5_8BHL_008

3D structure

PDB id

8BHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8BHL_008 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.1175

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

8BHL|1|2|C|36
8BHL|1|2|U|37
8BHL|1|2|G|38
8BHL|1|2|G|39
*
8BHL|1|2|C|403
8BHL|1|2|G|404
8BHL|1|2|U|405
8BHL|1|2|G|406
*
8BHL|1|2|C|436
8BHL|1|2|U|437
8BHL|1|2|U|438
8BHL|1|2|U|439
8BHL|1|2|C|440
8BHL|1|2|A|441
8BHL|1|2|G|442
*
8BHL|1|2|C|492
8BHL|1|2|A|493
8BHL|1|2|G|494
8BHL|1|2|A|495
8BHL|1|2|A|496
8BHL|1|2|G|497
8BHL|1|2|A|498
8BHL|1|2|A|499
8BHL|1|2|G|500
*
8BHL|1|2|C|545
8BHL|1|2|A|546
8BHL|1|2|A|547
8BHL|1|2|G|548

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain h

30S ribosomal protein S4

Chain p

30S ribosomal protein S12