J5_8BHN_001

3D structure

PDB id

8BHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8BHN|1|0|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8BHN_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1254

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8BHN|1|0|C|47
8BHN|1|0|G|48
8BHN|1|0|A|49
8BHN|1|0|U|50
8BHN|1|0|G|51
8BHN|1|0|A|52
8BHN|1|0|A|53
8BHN|1|0|G|54
*
8BHN|1|0|C|116
8BHN|1|0|G|117
8BHN|1|0|A|118
8BHN|1|0|A|119
8BHN|1|0|U|120
8BHN|1|0|G|121
*
8BHN|1|0|C|130
8BHN|1|0|A|131
*
8BHN|1|0|U|148
8BHN|1|0|A|149
8BHN|1|0|U|150
*
8BHN|1|0|A|176
8BHN|1|0|G|177
8BHN|1|0|G|178

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain c

50S ribosomal protein L34