3D structure

PDB id
8BHN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.85 Å

Loop

Sequence
GAAAGACC*GGAUAACAG*CCUCGAUGUC*GGUUUAG*CGGUCC
Length
40 nucleotides
Bulged bases
8BHN|1|0|A|2062, 8BHN|1|0|A|2448, 8BHN|1|0|U|2449, 8BHN|1|0|U|2506, 8BHN|1|0|U|2609
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8BHN|1|0|G|2057
8BHN|1|0|A|2058
8BHN|1|0|A|2059
8BHN|1|0|A|2060
8BHN|1|0|G|2061
8BHN|1|0|A|2062
8BHN|1|0|C|2063
8BHN|1|0|C|2064
*
8BHN|1|0|G|2446
8BHN|1|0|G|2447
8BHN|1|0|A|2448
8BHN|1|0|U|2449
8BHN|1|0|A|2450
8BHN|1|0|A|2451
8BHN|1|0|C|2452
8BHN|1|0|A|2453
8BHN|1|0|G|2454
*
8BHN|1|0|C|2498
8BHN|1|0|C|2499
8BHN|1|0|U|2500
8BHN|1|0|C|2501
8BHN|1|0|G|2502
8BHN|1|0|A|2503
8BHN|1|0|U|2504
8BHN|1|0|G|2505
8BHN|1|0|U|2506
8BHN|1|0|C|2507
*
8BHN|1|0|G|2582
8BHN|1|0|G|2583
8BHN|1|0|U|2584
8BHN|1|0|U|2585
8BHN|1|0|U|2586
8BHN|1|0|A|2587
8BHN|1|0|G|2588
*
8BHN|1|0|C|2606
8BHN|1|0|G|2607
8BHN|1|0|G|2608
8BHN|1|0|U|2609
8BHN|1|0|C|2610
8BHN|1|0|C|2611

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain 4
Transfer RNA; tRNA
Chain 5
Transfer RNA; tRNA
Chain 6
fMet-Lys dipeptide
Chain A
50S ribosomal protein L2
Chain B
50S ribosomal protein L3
Chain C
50S ribosomal protein L4
Chain I
50S ribosomal protein L15
Chain J
50S ribosomal protein L16
Chain P
50S ribosomal protein L22
Chain a
50S ribosomal protein L32

Coloring options:

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