J5_8BHP_001

3D structure

PDB id

8BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8BHP|1|0|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8BHP_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1178

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8BHP|1|0|C|47
8BHP|1|0|G|48
8BHP|1|0|A|49
8BHP|1|0|U|50
8BHP|1|0|G|51
8BHP|1|0|A|52
8BHP|1|0|A|53
8BHP|1|0|G|54
*
8BHP|1|0|C|116
8BHP|1|0|G|117
8BHP|1|0|A|118
8BHP|1|0|A|119
8BHP|1|0|U|120
8BHP|1|0|G|121
*
8BHP|1|0|C|130
8BHP|1|0|A|131
*
8BHP|1|0|U|148
8BHP|1|0|A|149
8BHP|1|0|U|150
*
8BHP|1|0|A|176
8BHP|1|0|G|177
8BHP|1|0|G|178

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain c

50S ribosomal protein L34