J5_8BHP_008
3D structure
- PDB id
- 8BHP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.37 Å
Loop
- Sequence
- CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG
- Length
- 28 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8BHP_008 not in the Motif Atlas
- Homologous match to J5_5J7L_002
- Geometric discrepancy: 0.1131
- The information below is about J5_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_67416.1
- Basepair signature
- cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
8BHP|1|2|C|36
8BHP|1|2|U|37
8BHP|1|2|G|38
8BHP|1|2|G|39
*
8BHP|1|2|C|403
8BHP|1|2|G|404
8BHP|1|2|U|405
8BHP|1|2|G|406
*
8BHP|1|2|C|436
8BHP|1|2|U|437
8BHP|1|2|U|438
8BHP|1|2|U|439
8BHP|1|2|C|440
8BHP|1|2|A|441
8BHP|1|2|G|442
*
8BHP|1|2|C|492
8BHP|1|2|A|493
8BHP|1|2|G|494
8BHP|1|2|A|495
8BHP|1|2|A|496
8BHP|1|2|G|497
8BHP|1|2|A|498
8BHP|1|2|A|499
8BHP|1|2|G|500
*
8BHP|1|2|C|545
8BHP|1|2|A|546
8BHP|1|2|A|547
8BHP|1|2|G|548
Current chains
- Chain 2
- 16S rRNA RRSB-RRNA
Nearby chains
- Chain h
- 30S ribosomal protein S4
- Chain p
- 30S ribosomal protein S12
Coloring options: