J5_8BIL_008

3D structure

PDB id

8BIL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8BIL_008 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.1148

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

8BIL|1|2|C|36
8BIL|1|2|U|37
8BIL|1|2|G|38
8BIL|1|2|G|39
*
8BIL|1|2|C|403
8BIL|1|2|G|404
8BIL|1|2|U|405
8BIL|1|2|G|406
*
8BIL|1|2|C|436
8BIL|1|2|U|437
8BIL|1|2|U|438
8BIL|1|2|U|439
8BIL|1|2|C|440
8BIL|1|2|A|441
8BIL|1|2|G|442
*
8BIL|1|2|C|492
8BIL|1|2|A|493
8BIL|1|2|G|494
8BIL|1|2|A|495
8BIL|1|2|A|496
8BIL|1|2|G|497
8BIL|1|2|A|498
8BIL|1|2|A|499
8BIL|1|2|G|500
*
8BIL|1|2|C|545
8BIL|1|2|A|546
8BIL|1|2|A|547
8BIL|1|2|G|548

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain h

30S ribosomal protein S4

Chain p

30S ribosomal protein S12