J5_8BIM_005
3D structure
- PDB id
- 8BIM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.04 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 8BIM|1|0|A|2062, 8BIM|1|0|A|2448, 8BIM|1|0|U|2449, 8BIM|1|0|U|2506, 8BIM|1|0|U|2609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BIM|1|0|G|2057
8BIM|1|0|A|2058
8BIM|1|0|A|2059
8BIM|1|0|A|2060
8BIM|1|0|G|2061
8BIM|1|0|A|2062
8BIM|1|0|C|2063
8BIM|1|0|C|2064
*
8BIM|1|0|G|2446
8BIM|1|0|G|2447
8BIM|1|0|A|2448
8BIM|1|0|U|2449
8BIM|1|0|A|2450
8BIM|1|0|A|2451
8BIM|1|0|C|2452
8BIM|1|0|A|2453
*
8BIM|1|0|U|2500
8BIM|1|0|C|2501
8BIM|1|0|G|2502
8BIM|1|0|A|2503
8BIM|1|0|U|2504
8BIM|1|0|G|2505
8BIM|1|0|U|2506
8BIM|1|0|C|2507
*
8BIM|1|0|G|2582
8BIM|1|0|G|2583
8BIM|1|0|U|2584
8BIM|1|0|U|2585
8BIM|1|0|U|2586
8BIM|1|0|A|2587
8BIM|1|0|G|2588
*
8BIM|1|0|C|2606
8BIM|1|0|G|2607
8BIM|1|0|G|2608
8BIM|1|0|U|2609
8BIM|1|0|C|2610
8BIM|1|0|C|2611
Current chains
- Chain 0
- 23S rRNA RRLG-RRNA
Nearby chains
- Chain 4
- Transfer RNA; tRNA
- Chain A
- 50S ribosomal protein L2
- Chain B
- 50S ribosomal protein L3
- Chain C
- 50S ribosomal protein L4
- Chain I
- 50S ribosomal protein L15
- Chain J
- 50S ribosomal protein L16
- Chain P
- 50S ribosomal protein L22
- Chain a
- 50S ribosomal protein L32
Coloring options: