J5_8BJQ_001
3D structure
- PDB id
- 8BJQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 8BJQ|1|C3|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8BJQ_001 not in the Motif Atlas
- Homologous match to J5_8C3A_001
- Geometric discrepancy: 0.0618
- The information below is about J5_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BJQ|1|1|A|20
8BJQ|1|1|G|21
8BJQ|1|1|G|22
*
8BJQ|1|C3|C|35
8BJQ|1|C3|G|36
8BJQ|1|C3|A|37
8BJQ|1|C3|U|38
8BJQ|1|C3|G|39
8BJQ|1|C3|A|40
8BJQ|1|C3|A|41
8BJQ|1|C3|G|42
*
8BJQ|1|C3|U|102
8BJQ|1|C3|G|103
8BJQ|1|C3|A|104
8BJQ|1|C3|A|105
8BJQ|1|C3|C|106
8BJQ|1|C3|G|107
*
8BJQ|1|C3|C|115
8BJQ|1|C3|G|116
*
8BJQ|1|C3|C|137
8BJQ|1|C3|A|138
8BJQ|1|C3|U|139
Current chains
- Chain 1
- 25S rRNA
- Chain C3
- 5.8S rRNA
Nearby chains
- Chain LN
- 60S ribosomal protein L15-A
- Chain LX
- 60S ribosomal protein L25
- Chain Lh
- 60S ribosomal protein L35-A
- Chain Lj
- 60S ribosomal protein L37-A
- Chain Ll
- 60S ribosomal protein L39
Coloring options: