J5_8BJQ_005
3D structure
- PDB id
- 8BJQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 8BJQ|1|1|A|2404, 8BJQ|1|1|A|2817, 8BJQ|1|1|U|2818, 8BJQ|1|1|G|2874, 8BJQ|1|1|U|2978, 8BJQ|1|1|U|2979
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BJQ|1|1|A|2399
8BJQ|1|1|G|2400
8BJQ|1|1|A|2401
8BJQ|1|1|A|2402
8BJQ|1|1|G|2403
8BJQ|1|1|A|2404
8BJQ|1|1|C|2405
8BJQ|1|1|C|2406
*
8BJQ|1|1|G|2815
8BJQ|1|1|G|2816
8BJQ|1|1|A|2817
8BJQ|1|1|U|2818
8BJQ|1|1|A|2819
8BJQ|1|1|A|2820
8BJQ|1|1|C|2821
8BJQ|1|1|U|2822
8BJQ|1|1|G|2823
*
8BJQ|1|1|C|2867
8BJQ|1|1|U|2868
8BJQ|1|1|U|2869
8BJQ|1|1|C|2870
8BJQ|1|1|G|2871
8BJQ|1|1|A|2872
8BJQ|1|1|U|2873
8BJQ|1|1|G|2874
8BJQ|1|1|U|2875
8BJQ|1|1|C|2876
*
8BJQ|1|1|G|2951
8BJQ|1|1|G|2952
8BJQ|1|1|U|2953
8BJQ|1|1|U|2954
8BJQ|1|1|U|2955
8BJQ|1|1|A|2956
8BJQ|1|1|G|2957
*
8BJQ|1|1|U|2975
8BJQ|1|1|A|2976
8BJQ|1|1|G|2977
8BJQ|1|1|U|2978
8BJQ|1|1|U|2979
8BJQ|1|1|U|2980
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L2-A
- Chain LB
- 60S ribosomal protein L3
- Chain LC
- 60S ribosomal protein L4-A
- Chain LI
- 60S ribosomal protein L10
- Chain La
- 60S ribosomal protein L28
- Chain Lb
- 60S ribosomal protein L29
Coloring options: