J5_8BN3_005
3D structure
- PDB id
- 8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S, ES7s delta, eIF5A, Stm1 containing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 8BN3|1|1|A|2817, 8BN3|1|1|U|2873, 8BN3|1|1|G|2874, 8BN3|1|1|U|2978, 8BN3|1|1|U|2979
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8BN3|1|1|A|2399
8BN3|1|1|G|2400
8BN3|1|1|A|2401
8BN3|1|1|A|2402
8BN3|1|1|G|2403
8BN3|1|1|A|2404
8BN3|1|1|C|2405
8BN3|1|1|C|2406
*
8BN3|1|1|G|2815
8BN3|1|1|G|2816
8BN3|1|1|A|2817
8BN3|1|1|U|2818
8BN3|1|1|A|2819
8BN3|1|1|A|2820
8BN3|1|1|C|2821
8BN3|1|1|U|2822
8BN3|1|1|G|2823
*
8BN3|1|1|C|2867
8BN3|1|1|U|2868
8BN3|1|1|U|2869
8BN3|1|1|C|2870
8BN3|1|1|G|2871
8BN3|1|1|A|2872
8BN3|1|1|U|2873
8BN3|1|1|G|2874
8BN3|1|1|U|2875
8BN3|1|1|C|2876
*
8BN3|1|1|G|2951
8BN3|1|1|G|2952
8BN3|1|1|U|2953
8BN3|1|1|U|2954
8BN3|1|1|U|2955
8BN3|1|1|A|2956
8BN3|1|1|G|2957
*
8BN3|1|1|U|2975
8BN3|1|1|A|2976
8BN3|1|1|G|2977
8BN3|1|1|U|2978
8BN3|1|1|U|2979
8BN3|1|1|U|2980
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain L2
- 60S ribosomal protein L2-A
- Chain L3
- 60S ribosomal protein L3
- Chain L4
- RPL4A isoform 1
- Chain N8
- 60S ribosomal protein L28
- Chain N9
- 60S ribosomal protein L29
- Chain eI
- Eukaryotic translation initiation factor 5A
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