J5_8BN3_007

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

8BN3|1|2|A|541, 8BN3|1|2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BN3|1|2|C|31
8BN3|1|2|U|32
8BN3|1|2|U|33
8BN3|1|2|G|34
8BN3|1|2|U|35
*
8BN3|1|2|A|473
8BN3|1|2|A|474
8BN3|1|2|A|475
8BN3|1|2|U|476
8BN3|1|2|A|477
8BN3|1|2|A|478
8BN3|1|2|C|479
*
8BN3|1|2|G|509
8BN3|1|2|G|510
8BN3|1|2|A|511
8BN3|1|2|A|512
8BN3|1|2|U|513
8BN3|1|2|G|514
8BN3|1|2|A|515
8BN3|1|2|G|516
*
8BN3|1|2|C|536
8BN3|1|2|G|537
8BN3|1|2|A|538
8BN3|1|2|G|539
8BN3|1|2|G|540
8BN3|1|2|A|541
8BN3|1|2|A|542
8BN3|1|2|C|543
8BN3|1|2|A|544
8BN3|1|2|A|545
8BN3|1|2|U|546
*
8BN3|1|2|A|592
8BN3|1|2|U|593
8BN3|1|2|A|594
8BN3|1|2|G|595

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain E0

40S ribosomal protein S30-A

Chain S9

Small ribosomal subunit protein uS4A