J5_8BN3_009

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAAU*AUG*CGA*UGGUU

Length

43 nucleotides

Bulged bases

8BN3|1|2|U|128, 8BN3|1|2|U|132, 8BN3|1|2|U|133, 8BN3|1|2|U|134, 8BN3|1|2|A|135, 8BN3|1|2|C|136, 8BN3|1|2|U|137, 8BN3|1|2|A|140, 8BN3|1|2|U|141, 8BN3|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BN3|1|2|A|124
8BN3|1|2|U|125
8BN3|1|2|A|126
8BN3|1|2|G|127
8BN3|1|2|U|128
8BN3|1|2|U|129
8BN3|1|2|C|130
8BN3|1|2|C|131
8BN3|1|2|U|132
8BN3|1|2|U|133
8BN3|1|2|U|134
8BN3|1|2|A|135
8BN3|1|2|C|136
8BN3|1|2|U|137
8BN3|1|2|A|138
8BN3|1|2|C|139
8BN3|1|2|A|140
8BN3|1|2|U|141
8BN3|1|2|G|142
8BN3|1|2|G|143
*
8BN3|1|2|C|172
8BN3|1|2|A|173
8BN3|1|2|U|174
8BN3|1|2|G|175
8BN3|1|2|C|176
8BN3|1|2|U|177
8BN3|1|2|U|178
8BN3|1|2|A|179
8BN3|1|2|A|180
8BN3|1|2|A|181
8BN3|1|2|A|182
8BN3|1|2|U|183
*
8BN3|1|2|A|202
8BN3|1|2|U|203
8BN3|1|2|G|204
*
8BN3|1|2|C|263
8BN3|1|2|G|264
8BN3|1|2|A|265
*
8BN3|1|2|U|289
8BN3|1|2|G|290
8BN3|1|2|G|291
8BN3|1|2|U|292
8BN3|1|2|U|293

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

Small ribosomal subunit protein eS4A

Chain S6

Small ribosomal subunit protein eS6A

Chain S8

40S ribosomal protein S8